Publications

Search for publications at Department of Computer Science

Below you find a complete list of publications published and edited by scientists at the Department of Computer Science

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Sørensen, T. S., Schaeffter, T., Noe, K. Ø. & Schacht Hansen, M. (2007). Fast Gridding on Commodity Graphics Hardware. In Proceedings of ISMRM Workshop on Non-Cartesian MRI

Sørensen, T. S., Schaeffter, T., Noe, K. Ø. & Schacht Hansen, M. (2008). Accelerating the Non-equispaced Fast Fourier Transform on Commodity Graphics Hardware. I E E E Transactions on Medical Imaging, 27(4), 538-547. https://doi.org/10.1109/TMI.2007.909834

Sørensen, T. B. (2008). Computing Equilibria of Two Player Games. Aarhus Universitetsforlag.

Sørensen, T. S., Atkinson, D., Boubertakh, R., Schaeffter, T. & Hansen, M. S. (2008). Rapid Non-Cartesian Parallel Imaging Reconstruction on Commodity Graphics Hardware. In Proceedings of the 16th Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine: Image Reconstruction (pp. 1490). Wiley-Interscience.

Sørensen, T. S., Beerbaum, P., Mosegaard, J., Rasmusson, A., Schaeffter, T., Austin, C., Razavi, R. & Greil, G. F. (2008). Virtual Cardiotomy based on 3D Magnetic Resonance Imaging for Preoperative Planning in Congenital Heart Disease. Pediatric Radiology, 38, 1314-1322. https://doi.org/10.1007/s00247-008-1032-5

Sørensen, T. S., Beerbaum, P., Mosegaard, J. & Greil, G. F. (2009). Developing and Evaluating Virtual Cardiotomy for Preoperative Planning in Congenital Heart Disease. Studies in Health Technology and Informatics, 340-345. https://doi.org/10.3233/978-1-58603-964-6-340

Sørensen, T. S., Atkinson, D., Schaeffter, T. & Hansen, M. S. (2009). Real-time Reconstruction of Sensitivity Encoded Radial Magnetic Resonance Imaging Using a Graphics Processing Unit. I E E E Transactions on Medical Imaging, 28(12), 1974-1985. https://doi.org/10.1109/TMI.2009.2027118

Sørensen, T. S., Noe, K. Ø., Christoffersen, C. P. V., Kristiansen, M., Mouridsen, K., Østerby, O. & Brix, L. (2010). Active Contours in Optical Flow Fields for Image Sequence Segmentation. International Symposium on Biomedical Imaging. Proceedings, 916 - 919. https://doi.org/10.1109/ISBI.2010.5490136

Sørensen, T. S. & Hansen, M. S. (2010). Real-time Non-Cartesian Magnetic Resonance Imaging. Abstract from Dansk Selskab for Medicinsk Fysik - årsmøde symposium, Odense, Denmark.

Sørensen, T. S., Prieto, C., Atkinson, D., Hansen, M. S. & Schaeffter, T. (2010). GPU accelerated iterative SENSE reconstruction of radial phase encoded whole-heart MRI. In Proceedings of the 18th ISMRM Scientific Meeting and Exhibition: International Society for Magnetic Resonance in Medicine ISMRM/SMRT Central Office, Berkeley, CA.

Sørensen, T. S., Pedersen, E. M., Hansen, O. K. & Sørensen, K. (2003). Visualization of morphological details in congenitally malformed hearts: virtual three-dimensional reconstruction from magnetic resonance imaging. Cardiology in the Young, 13(5), 451-60.

Sørensen, T. S., Therkildsen, S. V., Hansen, O. K., Sørensen, K. & Pedersen, E. M. (2002). Images in cardiovascular medicine. Total cavo-pulmonary connection: a virtual 3-dimensional fly-through. Circulation, 105(20), E176-6.

Sørensen, T. S., Körperich, H., Greil, G. F., Eichhorn, J., Barth, P., Meyer, H., Pedersen, E. M. & Beerbaum, P. (2004). Operator-independent isotropic three-dimensional magnetic resonance imaging for morphology in congenital heart disease: a validation study. Circulation, 110(2), 163-9. https://doi.org/10.1161/01.CIR.0000134282.35183.AD

Sørensen, T. S., Mosegaard, J., Kislinskiy, S. & Greil, G. (2014). Virtual Surgery in Congenital Heart Disease. In F. Saremi (Ed.), Cardiac CT and MR for Adult Congenital Heart Disease (pp. 515-523). Springer. https://doi.org/10.1007/978-1-4614-8875-0_23

Sørensen, J. L., Knudsen, M., Hansen, F. T., Olesen, C., Romans Fuertes, P., Lee, T. V., Søndergaard, T. E., Pedersen, C. N. S., Brodersen, D. E. & Giese, H. (2014). Fungal NRPS-dependent siderophores: From function to prediction. In J-F. Martin, C. Garcia-Estrada & S. Zeilinger (Eds.), Biosynthesis and Molecular Genetics of Fungal Secondary Metabolites (pp. 317-339). Springer. Fungal Biology https://doi.org/10.1007/978-1-4939-1191-2_15

Sørensen, L. B. & Nielsen, K. (2019). Hvorfor undervise i engineering i grundskolen? In Engineering (pp. 20-29). VIA University College. Liv i skolen : tidsskriftet om lærernes hverdag og det gode arbejde i skolen Vol. 2019 No. 2

Sørensen, M-L. S. K., Fog, B. V., Musaeus, L. H. & Petersen, M. G. (2022). Knit x Code: Exploring a Craftsmanship-driven Approach to Computational Thinking. In Participative Computing for Sustainable Futures : Adjunct Proceedings of the 12th Nordic Conference on Human-Computer Interaction (NordiCHI'22) [48] Association for Computing Machinery. https://doi.org/10.1145/3547522.3547680

Sørensen, M-L. S. K., Fog, B. V., Musaeus, L. H. & Petersen, M. G. (2022). Knit x Code - Exploring a Craftsmanship-driven Approach to Computational Thinking. Design United. https://www.4tu.nl/du/columns/Knit%20x%20Code/

Sørensen, M. L. S. K., Bertelsen, A. B., Nordmark Hoffmann, N., Petersen, M. G. & Hoggan, E. (2022). MoLux: Negotiating Control with a Shape-Changing Lamp at Home. In Participative Computing for Sustainable Futures : Adjunct Proceedings of the 12th Nordic Conference on Human-Computer Interaction (NordiCHI'22) [38] Association for Computing Machinery. ACM International Conference Proceeding Series https://doi.org/10.1145/3546155.3547271

Søndergaard, E., Gormsen, L. C., Nellemann, B., Vestergaard, E. T., Christiansen, J. S. & Nielsen, S. (2009). Visceral fat mass is a strong predictor of circulating ghrelin levels in premenopausal women. European Journal of Endocrinology, 160(3), 375-9. https://doi.org/10.1530/EJE-08-0735

Søndergaard, D., Knudsen, M. & Pedersen, C. N. S. (2014). Machine learning approaches to functional prediction of P-Type ATPases.

Søndergaard, D. A., Knudsen, M. & Pedersen, C. S. (2016). Computational Classification of P-Type ATPases. Methods in Molecular Biology, 1377, 493-502. https://doi.org/10.1007/978-1-4939-3179-8

Søndergaard, D. & Pedersen, C. N. S. (2015). PATBox: A Toolbox for Classification and Analysis of P-Type ATPases. PLOS ONE, 10(9), [e0139571]. https://doi.org/10.1371/journal.pone.0139571

Sølvsten, S. (Producer). (2021). Adiar: An I/O-efficient implementation of Binary Decision Diagrams. Software, GitHub. https://github.com/SSoelvsten/adiar

Sølvsten, S. C., de Pol, J. V., Jakobsen, A. B. & Thomasen, M. W. B. (2022). Adiar Binary Decision Diagrams in External Memory. In D. Fisman & G. Rosu (Eds.), Tools and Algorithms for the Construction and Analysis of Systems - 28th International Conference, TACAS 2022, Held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2022, Proceedings (pp. 295-313). Springer. Lecture Notes in Computer Science (LNCS) Vol. 13244 https://doi.org/10.1007/978-3-030-99527-0_16

Sætrom, P., Heale, B. S. E., Snøve, O., Aagaard, L., Alluin, J. & Rossi, J. J. (2007). Distance Constraints between microRNA Target Sites Dictate Efficacy and Cooperativity. Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkm133

Szehr, O., Dupont-Dupuis, F., Tomamichel, M. & Renner, R. (2013). Decoupling with unitary approximate two-designs. New Journal of Physics, 15(5). https://doi.org/10.1088/1367-2630/15/5/053022

Svoboda, J., Tkadlec, J., Pavlogiannis, A., Chatterjee, K. & Nowak, M. A. (2022). Infection dynamics of COVID-19 virus under lockdown and reopening. Scientific Reports, 12, [1526]. https://doi.org/10.1038/s41598-022-05333-5

Svenning, J-C. & Magård, E. (1999). Population ecology and conservation status of the last natural population of English yew Taxus baccata in Denmark. Biological Conservation, 88/2(Artikel 4), 173-182.

Svenning, J-C., Dalsgaard, B., Kissling, W. D., Lenoir, J. R. M. H. & Sandel, B. S. (2011). Strong paleoclimatic imprints on ecological patterns and function across scales. Abstract from 12th European Ecological Federation Congress, Avila, Spain.

Svenning, J-C. & Sandel, B. S. (2013). Disequilibrium vegetation dynamics under future climate change. American Journal of Botany, 100(7), 1266-1286. https://doi.org/10.3732/ajb.1200469

Svendsen, K. & Birkedal, L. (2014). Impredicative concurrent abstract predicates. In Z. Shao (Ed.), Programming Languages and Systems: 23rd European Symposium on Programming, ESOP 2014, Held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2014, Grenoble, France, April 5-13, 2014, Proceedings (pp. 149-168 ). Springer. Lecture Notes in Computer Science Vol. 8410 https://doi.org/10.1007/978-3-642-54833-8_9

Svendsen, K., Sieczkowski, F. & Birkedal, L. (2016). Transfinite step-indexing: Decoupling concrete and logical steps. In P. Thiemann (Ed.), Programming Languages and Systems (Vol. 9632, pp. 727-751). Springer VS. Lecture Notes in Computer Science Vol. 9632 https://doi.org/10.1007/978-3-662-49498-1_28

Svendsen, S. C. (2021). Algorithms for Massive Terrains and Graphs. Aarhus Universitet.

Sunesen, K. & Nielsen, M. (1996). Behavioural equivalence for infinite systems - Partially decidable! In J. Billington & W. Reisig (Eds.), Application and Theory of Petri Nets 1996: 17th International Conference Osaka, Japan, June 24-28, 1996 Proceedings (pp. 460-479). Springer. Lecture Notes in Computer Science Vol. 1091 https://doi.org/10.1007/3-540-61363-3_25

Sun, X., Wang, C. & Yu, W. (2012). The Relationship between Inner Product and Counting Cycles. Lecture Notes in Computer Science, 7256, 643-654. https://doi.org/10.1007/978-3-642-29344-3_54

Støvring, K. (2005). Extending the Extensional Lambda Calculus with Surjective Pairing is Conservative. (BRICS RS-05-35 ed.) University of Aarhus.

Støvring, K. (2006). Extending the Extensional Lambda Calculus with Surjective Pairing is Conservative. Logical Methods in Computer Science, 2(2(1)), 1-14.

Støvring, K. & Lassen, S. B. (2007). A Complete, Co-Inductive Syntactic Theory of Sequential Control and State. In Proceedings of the 34th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Languages (Vol. 42, Issue1, pp. 161-172). Society for Industrial and Applied Mathematics.

Støvring, K. (2006). Higher-Order Beta Matching with Solutions in Long Beta-Eta Normal Form. Nordic Journal of Computing, 13(1-2), 117-126.

Støvring, K. (2005). Normalization and Simple Types: PhD progress report. Department of Computer Science.

Støvring, K. (2007). On Reasoning Equationally: Lambda Calculi and Programs with Computional Effects. Datalogisk Institut. Daimi PhD Dissertation No. PD-07-11

Støttrup, N., Kristiansen, S. B., Løfgren, B., Hansen, B., Kimose, H-H., Bøtker, H. E. & Nielsen, T. T. (2006). L-glutamate and glutamine improve haemodynamic function and restore myocardial glycogen content during postischaemic reperfusion: A radioactive tracer study in the rat isolated heart. Clin Exp Pharmacol Physiol., 33(11), 1099-103.

Stølting Brodal, G., Kaporis, A. C., Papadopoulos, A. N., Sioutas, S., Tsakalidis, K. & Tsichlas, K. (2014). Dynamic 3-sided planar range queries with expected doubly-logarithmic time. Theoretical Computer Science, 526(March), 58-74. https://doi.org/10.1016/j.tcs.2014.01.014

Stølting Brodal, G., Davoodi, P., Lewenstein, M., Raman, R. & Satti, S. R. (2016). Two dimensional range minimum queries and Fibonacci lattices. Theoretical Computer Science, 638, 33-43. https://doi.org/10.1016/j.tcs.2016.02.016

Styrup, J. & Flarup, E. O. (2008). Architectural styles for heteogeneous multicore processors: an emperical study using the cell broadband engine architecture and architectural prototyping. Aarhus Universitet, Datalogisk Institut.

Sturtivant, C. & Frandsen, G. S. (1993). The computational efficacy of finite-field arithmetic. Theoretical Computer Science, 112(2), 291-309. https://doi.org/10.1016/0304-3975(93)90022-L

Strzebonski, A. & Tsigaridas, E. (2011). Univariate real root isolation in an extension field. In Proceedings of the 36th International Symposium on Symbolic and Algebraic Computation (pp. 321-328). Association for Computing Machinery. https://doi.org/10.1145/1993886.1993934

Strydonck, T. V., Georges, A. L., Guéneau, A., Trieu, A., Timany, A., Piessens, F., Birkedal, L. & Devriese, D. (2022). Proving full-system security properties under multiple attacker models on capability machines. In Proceedings - 2022 IEEE 35th Computer Security Foundations Symposium, CSF 2022 (pp. 80-95). IEEE. https://doi.org/10.1109/CSF54842.2022.9919645

Strocco, F. (2016). Type Soundness in the Dart Programming Language. Department of Computer Science, University of Aarhus.

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Marianne Dammand Iversen

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