Publications

Contribution to journal

Bury, M., Grigorescu, E., McGregor, A., Monemizadeh, M., Schwiegelshohn, C., Vorotnikova, S. & Zhou, S. (2019). Structural Results on Matching Estimation with Applications to Streaming. Algorithmica, 81(1), 367-392. https://doi.org/10.1007/s00453-018-0449-y

Chan, T. M. & Wilkinson, B. T. (2016). Adaptive and approximate orthogonal range counting. ACM Transactions on Algorithms, 12(4), 45:1-45:15. Article 45. https://doi.org/10.1145/2830567

Chan, T. M., Durocher, S., Skala, M. & Wilkinson, B. T. (2015). Linear-Space Data Structures for Range Minority Query in Arrays. Algorithmica, 72(4), 901-913. https://doi.org/10.1007/s00453-014-9881-9

Chytrý, M., Hennekens, S. M., Jiménez-Alfaro, B., Knollová, I., Dengler, J., Jansen, F., Landucci, F., Schaminée, J. H. J., Aćić, S., Agrillo, E., Ambarlı, D., Angelini, P., Apostolova, I., Attorre, F., Berg, C., Bergmeier, E., Biurrun, I., Botta-Dukát, Z., Brisse, H. ... Yamalov, S. (2015). European Vegetation Archive (EVA): an integrated database of European vegetation plots. Applied Vegetation Science, 19(1), 173-180. https://doi.org/10.1111/avsc.12191

Damgaard, C., Moeslund, J. E. & Wind, P. (2020). Changes in the abundance of Danish orchids over the past 30 years. Diversity, 12(6), Article 244. https://doi.org/10.3390/d12060244

Fløjgaard, C., Valdez, J. W., Dalby, L., Moeslund, J. E., Clausen, K. K., Ejrnæs, R., Pärtel, M. & Brunbjerg, A. K. (2020). Dark diversity reveals importance of biotic resources and competition for plant diversity across habitats. Ecology and Evolution, 10(12), 6078-6088. https://doi.org/10.1101/685040, https://doi.org/10.1002/ece3.6351

Fløjgaard, C., Frøslev, T. G., Brunbjerg, A. K., Bruun, H. H., Moeslund, J. E., Hansen, A. J. & Ejrnæs, R. (2019). Predicting provenance of forensic soil samples: Linking soil to ecological habitats by metabarcoding and supervised classification. PLOS ONE, 14(7), Article e0202844. https://doi.org/10.1371/journal.pone.0202844

Freksen, C. B. & Larsen, K. G. (2020). On Using Toeplitz and Circulant Matrices for Johnson–Lindenstrauss Transforms. Algorithmica, 82(2), 338-354. https://doi.org/10.1007/s00453-019-00644-y

Hájek, M., Jimenez-Alfaro, B., Hájek, O., Brancaleoni, L., Cantonati, M., Carbognani, M., Dedić, A., Dítě, D., Gerdol, R., Hájková, P., Horsáková, V., Jansen, F., Kamberović, J., Kapfer, J., Kolari, T. H. M., Lamentowicz, M., Lazarević, P. M., Mašić, E., Moeslund, J. E. ... Biţă-Nicolae, C. (2021). A European map of groundwater pH and calcium. Earth System Science Data, 13(3), 1089-1105. https://doi.org/10.5194/essd-13-1089-2021

Kambach, S., Sabatini, F. M., Attorre, F., Biurrun, I., Boenisch, G., Bonari, G., Čarni, A., Carranza, M. L., Chiarucci, A., Chytrý, M., Dengler, J., Garbolino, E., Golub, V., Güler, B., Jandt, U., Jansen, J., Jašková, A., Jiménez-Alfaro, B., Karger, D. N. ... Bruelheide, H. (2023). Climate-trait relationships exhibit strong habitat specificity in plant communities across Europe. Nature Communications, 14(1), Article 712. https://doi.org/10.1038/s41467-023-36240-6

Kejlberg-Rasmussen, C., Tao, Y., Tsakalidis, K., Tsichlas, K. & Yoon, J. (2021). I/O-efficient 2-d orthogonal range skyline and attrition priority queues. Computational Geometry: Theory and Applications, 93, Article 101689. https://doi.org/10.1016/j.comgeo.2020.101689

Kutz, M., Brodal, G. S., Kaligosi, K. & Katriel, I. (2011). Faster Algorithms for Computing Longest Common Increasing Subsequences. Journal of Discrete Algorithms, 9(4), 314-325. https://doi.org/10.1016/j.jda.2011.03.013

Larsen, K. G., Nelson, J., Huy L Nguyen & Thorup, M. (2019). Heavy Hitters via Cluster-Preserving Clustering. Communications of the ACM, 62(8), 95-100. https://doi.org/10.1145/3339185

Larsen, K. G., Munro, J. I., Nielsen, J. S. & Thankachan, S. V. (2015). On hardness of several string indexing problems. Theoretical Computer Science, 582, 74-82. https://doi.org/10.1016/j.tcs.2015.03.026

Larsen, K. G. (2014). ON range searching in the group model and combinatorial discrepancy. S I A M Journal on Computing, 43(2), 673-686. https://doi.org/10.1137/120865240

Madalgo, P. A., Barbay, J. & Chan, T. M. (2017). Instance-optimal geometric algorithms. Journal of the ACM, 64(1), Article 3. https://doi.org/10.1145/3046673

Mailund , Brodal, G. S., Fagerberg, R., Pedersen, C. N. S. & Phillips, D. (2006). Recrafting the Neighbor-Joining Method. B M C Bioinformatics, 7(29).

Moeslund, J. E., Arge, L. A., Bøcher, P. K., Nygaard, B. & Svenning, J-C. (2011). Geographically Comprehensive Assessment of Salt-Meadow Vegetation-Elevation Relations Using LiDAR. Wetlands, 31(3), 471-482. https://doi.org/10.1007/s13157-011-0179-2

Moeslund, J. E., Bøcher, P. K., Svenning, J-C., Møllehave, T. & Arge, L. (2009). Impacts of 21^stcentury sea-level rise on a Danish major city - an assessment based on fine-resolution digital topography and a new flooding algorithm. IOP Conference Series: Earth and Environment Science, 8(1), 012022. https://doi.org/10.1088/1755-1315/8/1/012022

Moeslund, J. E., Zlinszky, A., Ejrnæs, R., Brunbjerg, A. K., Bøcher, P. K., Svenning, J. C. & Normand, S. (2019). Light detection and ranging explains diversity of plants, fungi, lichens, and bryophytes across multiple habitats and large geographic extent. Ecological Applications, 29(5), Article e01907. https://doi.org/10.1002/eap.1907

Moeslund, J. E., Arge, L., Bøcher, P. K., Dalgaard, T., Ejrnæs, R., Odgaard, M. V. & Svenning, J-C. (2013). Topographically controlled soil moisture drives plant diversity patterns within grasslands. Biodiversity and Conservation, 22(10), 2151-2166. https://doi.org/10.1007/s10531-013-0442-3

Moeslund, J. E., Arge, L., Bøcher, P. K., Dalgaard, T., Odgaard, M. V., Nygaard, B. & Svenning, J-C. (2013). Topographically controlled soil moisture is the primary driver of local vegetation patterns across a lowland region. Ecosphere (Washington, D.C.), 4(7), Article 91. https://doi.org/10.1890/ES13-00134.1

Moeslund, J. E., Arge, L., Bøcher, P. K., Dalgaard, T. & Svenning, J-C. (2013). Topography as a driver of local terrestrial vascular plant diversity patterns. Nordic Journal of Botany, 31(2), 129-144. https://doi.org/10.1111/j.1756-1051.2013.00082.x

Moeslund, J. E., Clausen, K. K., Dalby, L., Fløjgaard, C., Pärtel, M., Pfeifer, N., Hollaus, M. & Brunbjerg, A. K. (2023). Using airborne lidar to characterize North European terrestrial high-dark-diversity habitats. Remote Sensing in Ecology and Conservation, 9(3), 354-369. Advance online publication. https://doi.org/10.1002/rse2.314

Moeslund, J. E., Brunbjerg, A. K., Clausen, K., Dalby, L., Fløjgaard, C., Juel, A. & Lenoir, J. (2017). Using dark diversity and plant characteristics to guide conservation and restoration. Journal of Applied Ecology, 54(6), 1730-1741. https://doi.org/10.1111/1365-2664.12867

Munteanu, A. & Schwiegelshohn, C. (2018). Coresets-Methods and History: A Theoreticians Design Pattern for Approximation and Streaming Algorithms. KI - Kunstliche Intelligenz, 32(1), 37-53. https://doi.org/10.1007/s13218-017-0519-3

Odgaard, M. V., Moeslund, J. E., Dalgaard, T., Bøcher, P. K. & Svenning, J-C. (2014). Human-driven topographic effects on the distribution of forest in a flat, lowland agricultural region. Journal of Geographical Sciences, 24(1), 76-92. https://doi.org/10.1007/s11442-014-1074-6

Odgaard, M. V., Moeslund, J. E., Bøcher, P. K., Dalgaard, T. & Svenning, J-C. (2013). The relative importance of geophysical constraints, amenity values, and farm-related factors in the dynamics of grassland set-aside. Agriculture, Ecosystems & Environment, 164, 286-291. https://doi.org/10.1016/j.agee.2012.09.009

Peterka, T., Hájek, M., Jiroušek, M., Jiménez-Alfaro, B., Aunina, L., Bergamini, A., Dítě, D., Felbaba-Klushyna, L., Graf, U., Hájková, P., Hettenbergerová, E., Ivchenko, T. G., Jansen, F., Koroleva, N. E., Lapshina, E. D., Lazarević, P. M., Moen, A., Napreenko, M. G., Pawlikowski, P. ... Chytrý, M. (2017). Formalized classification of European fen vegetation at the alliance level. Applied Vegetation Science, 20(1), 124-142. https://doi.org/10.1111/avsc.12271

Pouteau, R., Thuiller, W., Hobohm, C., Brunel, C., Conn, B. J., Dawson, W., de Sá Dechoum, M., Ebel, A. L., Essl, F., Fragman-Sapir, O., Fristoe, T., Jogan, N., Kreft, H., Lenzner, B., Meyer, C., Pergl, J., Pyšek, P., Verkhozina, A., Weigelt, P. ... van Kleunen, M. (2021). Climate and socio-economic factors explain differences between observed and expected naturalization patterns of European plants around the world. Global Ecology and Biogeography, 30(7), 1514-1531. https://doi.org/10.1111/geb.13316

Pouteau, R., Biurrun, I., Brunel, C., Chytrý, M., Dawson, W., Essl, F., Fristoe, T., Haveman, R., Hobohm, C., Jansen, F., Kreft, H., Lenoir, J., Lenzner, B., Meyer, C., Moeslund, J. E., Pergl, J., Pyšek, P., Svenning, J. C., Thuiller, W. ... van Kleunen, M. (2021). Potential alien ranges of European plants will shrink in the future, but less so for already naturalized than for not yet naturalized species. Diversity and Distributions, 27(11), 2063-2076. Advance online publication. https://doi.org/10.1111/ddi.13378

Sabatini, F. M., Lenoir, J., Hattab, T., Arnst, E. A., Chytrý, M., Dengler, J., De Ruffray, P., Hennekens, S. M., Jandt, U., Jansen, F., Jiménez-Alfaro, B., Kattge, J., Levesley, A., Pillar, V. D., Purschke, O., Sandel, B., Sultana, F., Aavik, T., Aćić, S. ... Bruelheide, H. (2021). sPlotOpen – An environmentally balanced, open-access, global dataset of vegetation plots. Global Ecology and Biogeography, 30(9), 1740-1764. https://doi.org/10.1111/geb.13346

Sand, A., Holt, M. K., Johansen, J., Fagerberg, R., Pedersen, C. N. S., Brodal, G. S. & Mailund, T. (2013). Algorithms for Computing the Triplet and Quartet Distances for Binary and General Trees. Biology, 2(4), 1189-1209. https://doi.org/10.3390/biology2041189

Sand, A., Holt, M. K., Johansen, J., Brodal, G. S., Mailund, T. & Pedersen, C. N. S. (2014). tqDist: A Library for Computing the Quartet and Triplet Distances Between Binary and General Trees. Bioinformatics, 30(4), 2079-2080. https://doi.org/10.1093/bioinformatics/btu157

Sporbert, M., Bruelheide, H., Seidler, G., Keil, P., Jandt, U., Austrheim, G., Biurrun, I., Campos, J. A., Čarni, A., Chytrý, M., Csiky, J., De Bie, E., Dengler, J., Golub, V., Grytnes, J-A., Indreica, A., Jansen, F., Martin Jiroušek, M., Lenoir, J. ... Welk, E. (2019). Assessing sampling coverage of species distribution in biodiversity databases. Journal of Vegetation Science, 30(4), 620-632. https://doi.org/10.1111/jvs.12763

Sporbert, M., Welk, E., Seidler, G., Jandt, U., Acic, S., Biurrun, I., Campos, J. A., Čarni, A., Cerabolini, B. E. L., Chytrý, M., Ćušterevska, R., Dengler, J., De Sanctis, M., Dziuba, T., Fagúndez, J., Field, R., Golub, V., He, T., Jansen, F. ... Bruelheide, H. (2021). Different sets of traits explain abundance and distribution patterns of European plants at different spatial scales. Journal of Vegetation Science, 32(2), Article e13016. https://doi.org/10.1111/jvs.13016

Sporbert, M., Keil, P., Seidler, G., Bruelheide, H., Jandt, U., Aćić, S., Biurrun, I., Campos, J. A., Čarni, A., Chytrý, M., Ćušterevska, R., Dengler, J., Golub, V., Jansen, F., Kuzemko, A., Lenoir, J., Marceno, C., Moeslund, J. E., Pérez-Haase, A. ... Welk, E. (2020). Testing macroecological abundance patterns: the relationship between local abundance and range size, range position and climatic suitability among European vascular plants. Journal of Biogeography, 47(10), 2210-2222. https://doi.org/10.1111/jbi.13926

Stissing, M., Mailund, T., Pedersen, C. S., Brodal, G. S. & Fagerberg, R. (2008). Computing the all-pairs quartet distance on a set of evolutionary trees. Journal of Bioinformatics and Computational Biology, 6(1), 37-50.

Stølting Brodal, G., Kaporis, A. C., Papadopoulos, A. N., Sioutas, S., Tsakalidis, K. & Tsichlas, K. (2014). Dynamic 3-sided planar range queries with expected doubly-logarithmic time. Theoretical Computer Science, 526(March), 58-74. https://doi.org/10.1016/j.tcs.2014.01.014

Stølting Brodal, G., Davoodi, P., Lewenstein, M., Raman, R. & Satti, S. R. (2016). Two dimensional range minimum queries and Fibonacci lattices. Theoretical Computer Science, 638, 33-43. https://doi.org/10.1016/j.tcs.2016.02.016

Tichý, L., Axmanová, I., Dengler, J., Guarino, R., Jansen, F., Midolo, G., Nobis, M. P., Van Meerbeek, K., Aćić, S., Attorre, F., Bergmeier, E., Biurrun, I., Bonari, G., Bruelheide, H., Campos, J. A., Čarni, A., Chiarucci, A., Ćuk, M., Ćušterevska, R. ... Chytrý, M. (2023). Ellenberg-type indicator values for European vascular plant species. Journal of Vegetation Science, 34(1), Article e13168. https://doi.org/10.1111/jvs.13168

Valdez, J., Brunbjerg, A. K., Fløjgaard, C., Dalby, L., Clausen, K. K., Pärtel, M., Pfeifer, N., Hollaus, M., Wimmer, M. H., Ejrnæs, R. & Moeslund, J. E. (2021). Relationships between macro-fungal dark diversity and habitat parameters using LiDAR. Fungal Ecology, 51, Article 101054. https://doi.org/10.1016/j.funeco.2021.101054

Večeřa, M., Axmanova, I., Padullés Cubino, J., Lososová, Z., Divíšek, J., Knollová, I., Aćić, S., Biurrun, I., Boch, S., Bonari, G., Antonio Campos, J., Čarni, A., Carranza, M. L., Casella, L., Chiarucci, A., Ćušterevska, R., Pauline, D., Dengler, J., Fernandez-Gonzalez, F. ... Chytrý, M. (2021). Mapping species richness of plant families in European vegetation. Journal of Vegetation Science, 32(3), Article e13035. https://doi.org/10.1111/jvs.13035

Afshani, P., Freksen, C. B., Kamma, L. & Larsen, K. G. (2019). Lower bounds for multiplication via network coding. Leibniz International Proceedings in Informatics, LIPIcs, 132, Article 10. https://doi.org/10.4230/LIPIcs.ICALP.2019.10

Afshani, P. & Zeh, N. (2012). Lower Bounds for Sorted Geometric Queries in the I/O Model. Lecture Notes in Computer Science, 7501, 48-59 . https://doi.org/10.1007/978-3-642-33090-2_6

Afshani, P., Arge, L. A. & Larsen, K. D. (2009). Orthogonal Range Reporting in Three and Higher Dimensions. Symposium on Foundations of Computer Science. Annual Proceedings, 149-158. https://doi.org/10.1109/FOCS.2009.58

Afshani, P., Arge, L. A. & Larsen, K. D. (2010). Orthogonal Range Reporting: Query Lower Bounds, Optimal Structures in 3-d, and Higher Dimensional Improvements. Annual A C M Symposium on Computational Geometry. Proceedings, 240-246. https://doi.org/10.1145/1810959.1811001

Ajwani, D., Sitchinava, N. & Zeh, N. (2010). Geometric Algorithms for Private-Cache Chip Multiprocessors. Lecture Notes in Computer Science, 6347, 75-86. https://doi.org/10.1007/978-3-642-15781-3_7

Alamdari, S., Angelini, P., Chan, T. M., Di Battista, G., Frati, F., Lubiw, A., Patrignani, M., Roselli, V., Singla, S. & Wilkinson, B. T. (2013). Morphing Planar Graph Drawings with a Polynomial Number of Steps. The Annual A C M - S I A M Symposium on Discrete Algorithms. Proceedings, 24, 1656-1667. http://knowledgecenter.siam.org/0236-000137/0236-000137/1

Anagnostopoulos, A., Angeletti, F., Arcangeli, F., Schwiegelshohn, C. & Vitaletti, A. (2019). Random projection to preserve patient privacy. CEUR Workshop Proceedings, 2482.

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